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van den Ackerveken GF, Van Kan JA, and De Wit PJ (1992). Molecular analysis of the avirulence gene avr9 of the fungal tomato pathogen Cladosporium fulvum fully supports the gene-for-gene hypothesis. Plant J 2(3):359-366.

AgBios (2002). Global status of approved genetically modified plants. At:

Ahn S and Tanksley SD (1993). Comparative linkage maps of the rice and maize genomes. Proc Natl Acad Sci USA 90:7980-7984.

Ali GS and Reddy ASN (2000). Inhibition of fungal and bacterial plant pathogens by synthetic peptides: in vitro growth inhibition, interaction between peptides and inhibition of disease progression. Mol Plant-Microbe Interact 13:847-859.

An G, Jeon J-S, Lee S, Jung K-H, Jun S-H, Jeong D-H, Lee J, Jang S, Lee S-Y, Yang K, Lee B, Moon S, An K, Han M-J, Yu J-H, Lee N, An S-Y, Park S-H, Song E-S, Park I-S, and Lee H-S (2001). Generation of T-DNA insertional tagging line in rice. In: Khush GS, Brar DS, Hardy B eds. Rice Genetics IV. New Delhi: Science Publishers. pp 253-262.

Arabidopsis Genome Initiative (2001). Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 409:796-815.

Ausubel FM (2002). Summaries of National Science Foundation-sponsored Arabidopsis 2010 projects and National Science Foundation plant genome projects that are generating Arabidopsis resources for the community. Plant Physiol 129:394-437.

Azevedo C, Sadanandom A, Kitagawa K, Freialdenhoven A, Shirasu K, and Schulze-Lefert P (2002). The RAR1 interactor SGT1, an essential component of R gene-triggered disease resistance. Science 295:2073-2076.

Baker B, Zambryski P, Staskawicz B, and Dinesh-Kumar SP (1997). Signaling in plant-microbe interactions. Science 276:726-733.

Balhadere PV, Roster AJ, and Talbot NJ (1999). Identification of pathogenicity mutants of the rice blast fungus by insertional mutagenesis. Mol Plant-Microbe Interact 12:129-142.

Basse CW, Stumpferl S, and Kahmann R (2000). Characterization of a Ustilago maydis gene specifically induced during the biotrophic phase: evidence for negative as well as positive regulation. Mol Cell Biol 20(1):329-339.

Baulcomb D, Hamilton A, Voinnet O, Lu R, Peart JR, Malcuit I, and Moffett P (2002). Sense and susceptibility: dissecting disease resistance using viruses and silencing. In: Leong SA, Allen C, TrippletEW eds. Biology of Plant-Microbe Interactions. Vol. 3. St. Paul: ISMPMI. pp 1-10.

Bennetzen JL and Freeling M (1993). Grasses as a single genetic system: genome composition, collinearity and compatibility. Trends Genet 9:259-261.

Bent A and Yu I (1999). Applications of molecular biology to plant disease and insect resistance. Adv Agron 66:251-298.

Bertioli DJ, Guimaraes PM, Jones JDG, Thomas CM, Burrows PR, Monte DC, and Leal-Bertioli SCD (2001). Expression of tomato Cf genes and their corresponding avirulence genes in transgenic tobacco plants using nematode responsive promoters. Annals Appl Biol 138(3):333-342.

van der Biezen EA, Juwana H, Parker JE, and Jones JDG (2000). cDNA-AFLP display for the isolation of Peronospora parasitica genes expressed during infection in Arabidopsis thaliana. Mol Plant-Microbe Interact 13(8):895-898.

Bohnert HU, Fudal I, Dioh W, Tharreau D, Notteghem JL, and Le Brun MH (2001). A fungal polyketide syntase controls recognition of avirulent Magnaporthe grisea by resistant rice. Abstracts of the 10th International Congress on Molecular Plant-Microbe Interactions, Madison, Abstract 362.

Bolker M, Bohnert HU, Braun KH, Gorl J, and Kahmann R (1995). Tagging pathogenicity genes in Ustilago maydis by restriction enzyme-mediated integration (REMI). Mol Gen Genet 248:547-552.

Bonman M (1998). Rice disease management: industry approaches and perspectives. Abstract 3.6.7S of the International Congress on Plant Pathology, Edinburgh.

Boyko E, Kalendar R, Korzun V, Fellers J, Korol A, Schulman AH, and Gill BS (2002). A high-density cytogenetic map of the Aegilops tauschii genome incorporating retrotransposons and defense-related genes: insights into cereal chromosome structure and function. Plant Mol Biol 48(5):767-790.

Brouwer DJ and Osborn TC (1999). A molecular marker linkage map of tetraploid alfalfa (Medicago sativa L.). Theor Appl Genet 99(7-8):1194-1200.

Brown PO and Botstein D (1999). Exploring the new world of the genome with DNA microarrays. Nat Genet 21:33-37.

Brueggeman R, Rostoks N, Kudrna D, Kilian A, Han F, Chen J, Druka A, Steffenson B, and Kleinhofs A (2002). The barley stem rust-resistance gene Rpg1 is a novel disease-resistance gene with homology to receptor kinases. Proc Natl Acad Sci USA 99(14):9328-9333.

Brugmans B, del Carmen AF, Bachem CW, van Os H, van Eck HJ, and Visser RGF (2002). A novel method for the construction of genome wide transcriptome maps. Plant J 31:211-222.

Buckler E, IV and Thornsberry JM (2002). Plant molecular diversity and applications to genomics. Curr Opin Plant Biol 5: 107-111.

Cao H, Glazebrook J, Clarke JD, Volko S, and Dong X (1997). The Arabidopsis NPR1 gene that controls systemic acquired resistance encodes a novel protein containing ankyrin repeats. Cell 88(1):57-63.

Cao H, Li X, and Dong XN (1998). Generation of broad-spectrum disease resistance by overexpression of an essential regulatory gene in systemic acquired resistance. Proc Natl Acad Sci USA 95(11):6531-6536.

Carson R (1962). Silent Spring. Cambridge: Houghton Mifflin.

Cary JW, Rajasekaran K, Jaynes JM, and Cleveland TE (2000). Transgenic expression of a gene encoding a synthetic antimicrobial peptide result in inhibition of fungal growth in vitro and in planta. Plant Sci 154:171-181.

Chareonpornwattana S, Thara KV, Wang L, Datta SK, Panbangred W, and Muthukrishnan S (1999). Inheritance, expression, and silencing of a chitinase transgene in rice. Theor Appl Genet 98:371-378.

Chauhan RS and Leong SA (2002). Genomics of disease resistance loci in cereals. Recent Res Dev Genet 2:1-29.

Chauhan RS, Farman ML, Zhang H-B, and Leong SA (2002). Genetic and physical mapping of a rice blast resistance locus, Pi-CO39(t), corresponding to AVR1-CO39 of Magnaporthe grisea. Mol Gen Genom 267:603-612.

Chen M, SanMiguel P, De Oliveira AC, Woo S-S, Zhang H, Wing RA, and Bennetzen JL (1997). Microcolinearity in sh2-homologous regions of the maize, rice, and sorghum genomes. Proc Natl Acad Sci USA 94:3431-3435.

Chen WQ, Provart NJ, Glazebrook J, Katagiri F, Chang HS, Eulgem T, Mauch F, Luan S, Zou GZ, Whitham SA, Budworth PR, Tao Y, Xie ZY, Chen X, Lam S, Kreps JA, Harper JF, Si-Ammour A, Mauch-Mani B, Heinlein M, Kobayashi K, Hohn T, Dangl JL, Wang X, and Zhu T (2002). Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell 14(3):559-574.

Chern MS, Fitzgerald HA, Yadav RC, Canlas PE, Dong XN, and Ronald PC (2001). Evidence for a disease-resistance pathway in rice similar to the NPR1-mediated signaling pathway in Arabidopsis. Plant J 27(2):101 -113.

Chu S, Derisi J, Eisen M, Mulholland J, Botstein D, Brown PO, and Herskowitz I (1998). The transcriptional program of sporulation in budding yeast. Science 282:699-705.

Dangl J and Jones J (2001). Plant pathogens and integrated defense responses to infection. Nature 411:826-833.

Datta K, Velazhahan R, Oliva N, Ona I, Mew T, Khush GS, Muthukrishnan S, and Datta SK (1999). Over-expression of the cloned rice thaumatin-like protein (PR-5) gene in transgenic rice plant enhances environmental friendly resistance to Rhizoctonia solani causing sheath blight disease. Theor Appl Genet 98:1138-1145.

Datta SK, Baisakh N, Tu J, Narayanan NN, Balachandran S, Torrizo L, Abrigo E, Oliva N, Arboleda M, and Datta K (2002). Transgenic rice in the field and beyond. In: Leong SA, Allen C, Tripplet EW eds. Biology of Plant-Microbe Interactions. Vo1. 3. St. Paul: ISMPMI. pp 336-341.

De Groot MJA, Bundock P, Hooykaas PJJ, and Beijersbergen AGM (1998). Agrobacterium tumefaciens-mediated transformation of filamentous fungi. Nature Biotech 16:839-842.

De Wit PJGM and Joosten MHAJ (1999). Avirulence and resistance genes in the Cladosporium fulvum-tomato interaction. Curr Opin Microbiol 2(4):368-373.

De Wit PJGM, Brandwagt BF, van den Burg HA, Cai X, van der Hoorn RA, L de Jong CF, van't Klooster J, de Kock MJD, Kruijt M, Lindhout M, Luderer R, Takken FLW, Westerink N, Vervoort JJM, and Joosten MHAJ (2002). Molecular basis of co-evolution between Cladosporium fulvum and tomato. In: Leong SA, Allen C, Tripplet EW eds. Biology of Plant-Microbe Interactions. Vol. 3. St. Paul: ISMPMI. pp 175-180.

DeGray G, Rajasekaran K, Smith F, Sanford J, and Daniell H (2001). Expression of an antimicrobial peptide via the chloroplast genome to control phytopathogenic bacterial and fungi. Plant Physiol 127:852-862.

DeRisi JL, Iyer VR, and Brown PO (1997). Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278:680-686.

Dioh W, Tharreau D, Notteghem JL, Orbach M, and Lebrun MH (2000). Mapping of avirulence genes in the rice blast fungus, Magnaporthe grisea, with RFLP and RAPD markers. Mol Plant-Microbe Interact 13(2):217-227.

Dunford RP, Kurata N, Lauie DA, Money TA, Minobe Y, and Moore G (1995). Conservation of the fine-scale DNA marker order in the genomes of rice and the triticeae. Nucl Acids Res 23:2724-2728.

Durrant WE, Rowland O, Piedras P, Hammond-Kosack KE, and Jones JDG (2000). cDNA-AFLP reveals a striking overlap in race-specific resistance and wound response gene expression profiles. Plant Cell 12:963-977.

Evanson R, Hertdt RW, Hossain M eds. (1996). Rice Research Constraints in Asia: Progress and Priorities. Wallingford: CAB International.

FAO (2002). World agriculture: towards 2015/2030. http:///www.

Faris JD, Li WL, Liu DJ, Chen PD, and Gill BS (1999). Candidate gene analysis of quantitative disease resistance in wheat. Theor Appl Genet 98(2):219-225.

Faris JD, Haen KM, and Gill BS (2000). Saturation mapping of a gene-rich recombination hot spot region in wheat. Genetics 154(2):823-835.

Farman ML (2002). Meiotic deletion at the BUFl locus of the fungus Magnaporthe grisea is controlled by interaction with homologous chromosome. Genetics 160:137-148.

Farman ML and Leong SA (1995). Physical and genetic mapping of telomeres of Magnaporthe grisea. Genetics 140:479-492.

Farman ML and Leong SA (1998). Chromosome walking to the AVR1-CO39 avirulence gene of Magnaporthe grisea: discrepancy between the physical and genetic maps. Genetics 150:1049-1058.

Farman ML, Eto Y, Nakao Y, Tosa Y, Nakayashiki H, Mayama S, and Leong SA (2002). Analysis of the structure of the Avrl-CO39 avirulence locus in virulent rice-infecting isolates of Magnaporthe grisea. Mol Plant-Microbe Interac 15:6-16.

Fodor SP (1997). Massively parallel genomics. Science 277:393-395.

Friedrich G, Hauser-Hahn I, Koopmann E, Nennstiel D, Sievert K, Suelmann R, Vaupel M, Vollenbroich V, Basse C, Feldbrugge M, Kamper J, Steinberg G, Kahmann R, Aichinger C, Ebbert R, Jaimer B, Leuthner B, Li V, Schreier P, Arenz M, Henrich J, Kranz H, Kurapkar G, Schluter T, Schutte D, and Voss H (2001). The Ustilago maydis sequencing project. Abstracts of the 10th International Congress on Molecular Plant-Microbe Interactions, Madison, Abstract 246.

Fulton TM, Beckbunn T, Emmatty D, Eshed Y, Lopez J, Petiard V, Uhlig J, Zamir D, and Tanksley SD (1997). QTL analysis of an advanced backcross of lycopersicon peruvianum to the cultivated tomato and comparisons with qtls found in other wild species. Theor Appl Genet 95(5-6):881-894.

Gale MD and Devos KM (1998). Plant comparative genetics after 10 years. Science 282:656-659.

Gao A-G, Hakimi SM, Mittanck CA, Wu Y, Woerner BM, Stark DM, Shah DM, Liang J, and Rommens CM (2000). Fungal pathogen protection in potato by expression of a plant defensin peptide. Nat Biotech 18:1307-1310.

Gebhardt C and Valkonen JPT (2001). Organization of genes controlling disease resistance in the potato genome. Annu Rev Phytopathol 39:79-102.

Giaever G, Chu AM, Ni L, Connelly C, Riles L, Veronneau S, Dow S, Lucau-Danila A, Anderson K, Andre B, Arkin AP, Astromoff A, El-Bakkoury M, Bangham R, Benito R, Brachat S, Campanaro S, Curtiss M, Davis K, Deutschbauer A, Entian KD, Flaherty P, Foury F, Garfinkel DJ, Gerstein M, Gotte D, Guldener U, Hegemann JH, Hempel S, Herman Z, Jaramillo DF, Kelly DE, Kelly SL, Kotter P, LaBonte D, Lamb DC, Lan N, Liang H, Liao H, Liu L, Luo C, Lussier M, Mao R, Menard P, Ooi SL, Revuelta JL, Roberts CJ, Rose M, Ross-Macdonald P, Scherens B, Schimmack G, Shafer B, Shoemaker DD, Sookbai-Mahadeo S, Storms RK, Strathem JN, Valle G, Voet M, Volckaert G, Wang CY, Ward TR, Wilhelmy J, Winzeler EA,

Yang Y, Yen G, Youngman E, Yu K, Bussey H, Boeke JD, Snyder M, Philippsen P, Davis RW, and Johnston M (2002). Functional profiling of the Saccharomyces cerevisiae genome. Nature 418(6896):387-391.

Gillissen B, Bergemann J, Sandmann C, Schroeer B, Bolker M, and Kahmann R (1992). A two-component regulatory system for self/non-self recognition in Ustilago maydis. Cell 68:647-657.

Goff SA, Ricke D, Lan TH, Presting G, Wang RL, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchinson D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong JP, Miguel T, Paszkowski U, Zhang SP, Colbert M, Sun WL, Chen LL, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, and Briggs S (2002). A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296:92-100.

Greco R, Ouwerkert PBF, Sallaud C, Kohli A, Favalli C, Beguiristain T, Columbo L, Pe E, Puigdomenech P, Guiderdoni E, Christou P, Hoge JHC, and Pereira A (2001). Transposons and functional genomics in rice. In: Khush GS, Brar DS, Hardy B eds. Rice Genetics IV. New Delhi: Science Publishers. pp 263 -278.

Groot AT and Dicke M (2002). Insect-resistant transgenic plants in a multi-trophic context. Plant J 31:387-406.

Hamer JE, Farrall L, Orbach MJ, Valent B, and Chumley FG (1989). Host species-specific conservation of a family of repeated DNA sequences in the genome of a fungal plant pathogen. Proc Natl Acad Sci USA 86(24):9981-9985.

Hamer L, Adachi K, Montenegro-Chamorro MV, Tanzer MM, Mahanty SK, Lo C, Tarpey RW, Skalchunes AR, Heiniger RW, Frank SA, Darveaux BA, Lampe DJ, Slater TM, Ramamurty L, DeZwaan TM, Nelson GH, Shuster JR, Woessner J, and Hamer JE (2001). Gene discovery and gene function assignment in filamentous fungi. Proc Natl Acad Sci USA 98:5110-5115.

Han F, Kilian A, Chen JP, Kudma D, Steffenson B, Yamamoto K, Matsumoto T, Sasaki T, and Kleinhofs A (1999). Sequence analysis of a rice BAC covering the syntenous barley Rpg1 region. Genome 42(6):1071-1076.

Han Y, Liu X, Benny U, Kistler HC, and VanEtten HD (2001). Genes determining pathogenicity to pea are clustered on a supernumerary chromosome in the fungal pathogen Nectria haematococca. Plant J 25:305-314.

Haralampidis K, Maxwell CA, and Osboum AE (2001). Plant defence: avenacins vs. microbes. Abstracts of the 10th International Congress on Molecular Plant-Microbe Interactions, Madison, Abstract 304.

Hatta R, Ito K, Hosaki Y, Tanaka T, Tanaka A, Yamamoto M, Akimitsu K, and Tsuge T (2002). A conditionally dispensable chromosome controls host-specific pathogenicity in the fungal plant pathogen Alternaria altemata. Genetics 161:59-70.

Haynes PA and Yates JR, III (2000). Proteome profiling—pitfalls and progress. Yeast 17:81-87.

Helentjaris R, King G, Slocum M, Siedenstrange C, and Wegman S (1985). Restriction fragment length polymorphisms as probes for plant diversity and their development as tools for applied plant breeding. Plant Mol Biol 5:109-118.

Hennin C, Hofte M, and Diederichsen E (2001). Introduction of the Cf-9-Avr9 two component system in Brassica napus: functionality and application possibilities. Abstracts of the

10th International Congress on Molecular Plant-Microbe Interactions, Madison, Abstract 305.

Hirochika H, Mayo A, Yamazaki M, Takeda S, Abe K, Hirochika R, Agrawal GK, Watanabe T, Sugimoto K, Sasaki T, Murata K, Tanaka K, Onosato K, Miyazaki A, Yamashita Y, and Kojima N (2001). Khush GS, Brar DS, Hardy B eds. Rice Genetics IV. New Delhi: Science Publishers. pp 279 - 292.

van der Hoorn RAL, Laurent R, Roth R, and de Wit PJGM (2000). Agroinfiltration is a versatile tool that facilitates comparative analysis of Avr9/Cf-9-induced and Avf4/Cf-4-induced necrosis. Mol Plant-Microbe Interact 13:439-446.

van der Hoorn RAL, De Wit PJGM, and Joosten MHAJ (2002). Balancing selection favors guarding resistance proteins. Trends Plant Sci 2(7):67-71.

Houssain M (1997). Supply, demand and production potential of rice in Asia. In: Teng PS, Kropff MJ, ten Berge HFM, Dent JB, Lansigan FP, van Laar HH eds. Rice Suppy and Demand in Asia: A Socioeconomic and Biophysical Analysis. Dordrecht: Kluwer.

Huang L and Gill BS (2001). An RGA-like marker detects all known Lr21 leaf rust resistance gene family members in Aegilops tauschii and wheat. Theor Appl Genet 103(6-7):1007-1013.

Huang N, Angeles ER, Domingo J, Magpantay G, Singh S, Zhang G, Kumaravadivel N, Bennett J, and Khush GS (1997). Pyramiding of bacterial blight resistance genes in rice: marker-assisted selection using RFLP and PCR. Theor Appl Genet 95:313-320.

Huang J, Rozelle S, Pray C, and Wang Q (2002). Plant biotechnology in China. Science 295:674-677.

Hulbert SH, Richter TE, Axtell JD, and Bennetzen JL (1990). Genetic mapping and characterization of sorghum and related crops by means of maize probes. Proc Natl Acad Sci USA 87:4251-4255.

Information Systems for Biotechnology (2002). At: http://www.

Jarosch B, Kogel KH, and Schaffrath U (1999). The ambivalence of the barley Mlo locus: Mutations conferring resistance against powdery mildew (Blumeria graminis f. sp, hordei) enhance susceptibility to the rice blast fungus Magnaporthe grisea. Mol Plant-Microbe Interact 12(6):508-514.

Jones JT and Harrower BE (1998). A comparison of the efficiency of differential display and cDNA-AFLPs as tools for the isolation of differentially expressed parasite genes. Fund Appl Nematol 21(1):81 -88.

Kachroo P, Ahuja M, Leong SA, and Chattoo BB (1997). Organization and evolution of repeated DNA sequences in the rice blast fungus Magnaporthe grisea. Curr Genet 31:336-361.

Kamoun S, van West P, Vleeshouwers VGAA, de Groot KE, and Govers F (1998). Resistance of Nicotiana benthamina to Phytophthora infestans is mediated by the recognition of the elicitor protein INF1. Plant Cell 10:1413-1425.

Kamper J, Reichmann M, Romeis T, Bolker M, and Kahmann R (1995). Multiallelic recognition: nonself-dependent dimeriza-tion of the bE and bW homeodomain proteins in Ustilago maydis. Cell 81:73-83.

Kang S, Lebrun MH, Farrall L, and Valent B (2001). Gain of virulence caused by insertion of a Pot3 transposon in a Magnaporthe grisea avirulence gene. Mol Plant-Microbe Interact 14(5):671-674.

Kesseli RV, Paran I, and Michelmore RW (1994). Analysis of a detailed genetic linkage map of Lactuca sativa (lettuce) constructed from RFLP and R4PD markers. Genetics 136(4):1435-1446.

Khush GS (2001). Green revolution: the way forward. Nature Reviews Genet 2(10):815-822.

Khush GS and Bar DS (2001). Rice genetics from Mendel to functional genomics. In: Khush GS, Brar DS, Hardy B eds. Rice Genetics IV. New Delhi: Scientific Publishers. pp 3 -25.

Kilian A, Chen J, Han F, Steffenson B, and Kleinhofs A (1997). Towards map-based cloning of the barley stem rust resistance genes Rpgl and Rpg4 using rice as an intergenomic cloning vehicle. Plant Mol Biol 35(1-2):187-195.

Kim MC, Lee SH, Kim JK, Chun HJ, Choi MS, Chung WS, Moon BC, Kang CH, Park CY, Yoo JH, Kang YH, Koo SC, Koo YD, Jung JC, Kim ST, Schulze-Lefert P, Lee SY, and Cho MJ (2002a). Mlo, a modulator of plant defense and cell death, is a novel calmodulin-binding protein-Isolation and characterization of a rice Mlo homologue. J Biol Chem 277(22):19304-19314.

Kim MC, Panstruga R, Elliott C, Muller J, Devoto A, Yoon HW, Park HC, Cho MJ, and Schulze-Lefert P (2002b). Calmodulin interacts with MLO protein to regulate defence against mildew in barley. Nature 416(6879):447-450.

van der Knaap E, Song W-Y, Ruan D-L, Sauter M, Ronald PC, and Kende H (1999). Expression of a gibberellin-induced leucine-rich repeat receptor-like protein kinase in deepwater rice and its interaction with kinase-associated protein phosphatase. Plant Physiol 120:559-569.

Kole C, Williams PH, Rimmer SR, and Osborn TC (2002). Linkage mapping of genes controlling resistance to white rust (Albugo candida) in Brassica rapa (syn. campestris) and comparative mapping to Brassica napus and Arabidopsis thaliana. Genome 45(1):22-27.

Kowalski SP, Ebora RV, Kryder RD, and Potter RH (2002). Transgenic crops, biotechnology and ownership rights: what scientists need to know. Plant J 31:407 -421.

Krysan PJ, Young JC, and Sussman MR (1999). T-D.N.A. as an insertional mutagen in Arabidopsis. Plant Cell 11:2283-2290.

Kumar J, Huckelhoven R, Beckbove U, Nagarajan S, and Kogel KH (2001). A compromised Mlo pathway affects the response of barley to the necrotrophic fungus Bipolaris sorokiniana (Teleomorph: Cochliobolus sativus) and its toxins. Phytopathology 91(2):127-133.

Lashkari DA, Derisi JL, Mccusker JH, Namath AF, Gentile C, Hwang SY, Brown PO, and Davis RW (1997). Yeast microarrays for genome wide parallel genetic and gene expression analysis. Proc Natl Acad Sci USA 94(24):13057-13062.

van der Lee T, Robold A, Testa A, Van't Klooster JW, and Govers F (2001). Mapping of avirulence genes in Phytophthora infestans with amplified fragment length polymorphism markers selected by bulked segregant analysis. Genetics 157:949-956.

Leister D, Kurth I, Laurie DA, Yano M, Sasaki T, Devos K, Graner A, and Schulze-Lefert P (1998). Rapid reorganization of resistance gene homologues in cereal genomes. Proc Natl Acad Sci USA 95:370-375.

Li WL, Faris JD, Chittoor JM, Leach JE, Hulbert S, Liu DJ, Chen PD, and Gill BS (1999). Genomic manning of defense response genes in wheat. Theor Appl Genet 98(2):226-233.

Li WL, Faris JD, Muthukrishnan S, Liu DJ, Chen PD, and Gill BS (2001). Isolation and characterization of novel cDNA clones of acidic chitinases and -1,3-glucanases from wheat spikes infected by Fusarium graminearum. Theor Appl Genet 102:353-362.

Link AJ, Eng J, Schietlz DM, Carmack E, Mize GJ, Morris DR, Garvik BM, and Yates JR, III (1999). Direct analysis of protein complexes using mass spectrometry. Nat Biotechnol 17:676-682.

Lu S, Lyngholm L, Yang G, Bronson C, and Yoder OC (1994). Tagged mutations at the Tox 1 locus of Cochliobolus heterostrophus by restriction enzyme-mediated integration. Proc Natl Acad Sci USA 91:12649-12653.

Luderer R, Rivas S, Nurnberger T, Mattei B, Van den Hooven HW, Van der Hoorn RAL, Romeis T, Wehrfritz JM, Blume B, Nennstiel D, Zuidema D, Vervoort J, De Lorenzo G, Jones JDG, De Wit PJGM, and Joosten MHAJ (2001). No evidence for binding between resistance gene product Cf-9 of tomato and avirulence gene product AVR9 of Cladosporium mlvum. Mol Plant-Microbe Interact 14(7):867-876.

Mach JM, Castillo AR, Hoogstraten R, and Greenberg JT (2001). The Arabidopsis-accelerated cell death gene ACD2 encodes red chlorophyll catabolite reductase and suppresses the spread of disease symptoms. Proc Natl Acad Sci USA 98(2): 771-776.

Mackey D, Holt BF, III, Wilig A, and Dangl J (2002). RIN4 interacts with Pseudomonas syringae type III effector molecules and is required for RPMI-mediated resistance in Arabidopsis. Cell 108:743-754.

Mader P, Flie bach A, Dubois D, Gunst L, Fried P, and Niggli U (2002). Soil fertility and biodiversity in organic farming. Science 296:1694-1697.

Maleck K, Levine A, Eulgem T, Morgan A, Schmid J, Lawton KA, Dangl JL, and Dietrich RA (2000). The transcriptome of Arabidopsis thaliana during systemic acquired resistance. Nat Genet 26(4):403-410.

Maleck K, Neuenschwander U, Cade RM, Dietrich RA, Dangl JL, and Ryals JA (2002). Isolation and characterization of broad-spectrum disease-resistant Arabidopsis mutants. Genetics 160(4):1661-1671.

Martin GB, Brommonschenkel SH, Chunwongse J, Frary A, Ganal MW, Spivey, Wu T, Earle ED, and Tanksley SD (1993). Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science 262(5138):1432-1436.

McCouch SR, Kochert G, Yu ZH, Wang ZY, Khush GS, Coffman WR, and Tanksley SD (1988). Molecular mapping of rice chromosomes. Theor Appl Genet 76:815-829.

Melchers LS and Stuiver MH (2000). Novel genes for disease resistance breeding. Curr Opin Plant Biol 3:147-152.

Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishnan S, Sobral BW, and Young ND (1999). Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J 20:317-332.

Michelmore R (2002). Natural and artificial evolution of disease resistance genes. In: Leong SA, Allen C, Tripplet EW eds. Biology of Plant-Microbe Interactions. Vol. 3. St. Paul: ISMPMI. pp 23-29.

Mullins ED, Chen X, Romaine P, Raina R, Geiser DM, and Kang S (2001). Agrobacterium-mediated transformation of Fusarium oxysporum: an efficient tool for insertional mutagenesis and gene transfer. Phytopathology 9l(2):173-180.

Mussa HJ, Lloyd W, Sumner LW, and Harrison MJ (2002). Towards the identification of membrane proteins from Arbuscular mycorrhizas formed between Medicago truncatulu and Glomus versiforme. In: Leong SA, Allen C, Tripplet EW eds. Biology of Plant-Microbe Interactions. Vol. 3. St. Paul: ISMPMI. pp 192-196.

Muthukrishnan S, Liang GH, Trick HN, and Gill BS (2001). Pathogenesis-related proteins and their genes in cereals. Plant Cell Tissue Organ Culture 64(2-3):93-114.

Nitta N, Farman M, and Leong SA (1997). Genome organization of Magnaporthe grisea: Integration of genetic maps, clustering of transposable elements, and identification of genome duplications and rearrangements. Theor Appl Genet 95:20-32.

Nordborg M, Borevitz JO, Bergelson J, Berry CC, Chory J, Hagenblad J, Kreitman M, Maloof JN, Noyes T, Oefner PJ, Stahl EA, and Weigel D (2002). The extent of linkage disequilibrium in Arabidopsis thaliana. Nat Genet 30:190-193.

Oldach KH, Becker D, and Lorz H (2001). Heterologous expression of genes mediating enhanced fungal resistance in transgenic wheat. Mol Plant-Microbe Interact 14:832-838.

Oldroyd GED and Staskawicz BJ (1998). Genetically engineered broad-spectrum disease resistance in tomato. Proc Natl Acad Sci USA 95:10300-10305.

Orbach MJ, Farrall L, Sweigard JA, Chumley FG, and Valent B (2000). A telomeric avirulence gene determines efficacy for the rice blast resistance gene Pi-ta. Plant Cell 12(11):2019-2032.

Osusky M, Zhou GQ, Osuska L, Hancock RE, Kay WW, and Misra S (2000). Transgenic plants expressing cationic peptide chimeras exhibit broad-spectrum resistance to phytopathogens. Nat Biotechnol 18(11):1162-1166.

Paarlberg RL (2002). African famine, made in Europe. At: http://, August 26, 2002.

Peart JR, Cook G, Feys BJ, Parker JE, and Baulcombe DC (2002). An EDS1 orthologue is required for N-mediated resistance against tobacco mosaic virus. Plant J 29(5):569-579.

Pedras MSC, Zaharia IL, Gai Y, Shou Y, and Ward DE (2001). In planta sequential hydroxylation and glycosylation of a fungal phytotoxin: avoiding cell death and overcoming the fungal invader. Proc Natl Acad Sci USA 98:747-752.

Pflieger S, Palloix A, Caranta C, Blattes A, and Lefebvre V (2001). Defense response genes co-localize with quantitative disease resistance loci in pepper. Theor Appl Genet 103(6-7):920-929.

Piffanelli P, Zhou FS, Casais C, Orme J, Jarosch B, Schaffrath U, Collins NC, Panstruga R, and Schulze-Lefert P (2002). The barley MLO modulator of defense and cell death is responsive to biotic and abiotic stress stimuli. Plant Physiology 129(3):1076-1085.

Pongam P, Osborn TC, and Williams PH (1988). Genetic analysis and identification of amplified fragment length polymorphism markers linked to the alm1 avirulence gene of Leptosphaeria maculans. Phytopathology 88(10):1068-1072.

Pray CE, Huang J, Hu R, and Rozelle S (2002). Five years of Bt cotton in China—the benefits continue. Plant J 31:423-430.

Primig M, Williams RM, Winzeler EA, Tevzadzel GG, Conway AR, Hwang SY, Davis RW, and Esposito RE (2000). The core meiotic transcriptome in budding yeasts. Nature 26:415 -423.

Qin L, Prins P, Jones JT, Popeijus H, Smant G, Bakker J, and Helder J (2001). GenEST, a powerful bi-directional link between cDNA sequence data and gene expression profiles generated by cDNA-AFLP. Nucl Acids Res 29:1616-1622.

Rajasekaran K, Stromberg KD, Cary JW, and Cleveland TE (2001). Broad-spectrum antimicrobial activity in vitro of the synthetic peptide D4E1. J Agric Food Chem 49:2799-2803.

Rathjen JP, Chang JH, Staskawicz BJ, and Michelmore RW (1999). Constitutively active Pto induces a Prf-dependent hypersensitive response in the absence of avrPto. EMBO J 18(12):3232 -3240.

Reiger MA, Lamond M, Preston C, Powles SB, and Roush RT (2002). Pollen-mediated movement of herbicide resistance between commercial canola fields. Science 296:2386-2388.

Rho HS, Kang S, and Lee YH (2001). Agrobacterium tumefaciens-mediated transformation of the plant pathogenic fungus Magnaporthe grisea. Mol Cells 12(3):407-411.

Rommens CM and Kishore GM (2000). Exploiting the full potential of disease-resistance genes for agricultural use. Curr Opin Biotechnol 11:120-125.

Ronald PC, Albano B, Tabien R, Abenes L, Wu K, McCouch S, and Tanksley SD (1992). Genetic and physical analysis of the rice bacterial blight resistance locus Xa21. Mol Gen Genet 236:113-120.

Saghai Maroof MA, Yang GP, Biyashev RM, Maughan PJ, and Zhang Q (1996). Analysis of barley and rice genomes by comparative RFLP linkage mapping. Theor Appl Genet 92:541-551.

Sasaki A, Ashikari M, Ueguchi-Tanaka M, Itoh H, Nishimura A, Swapan D, Ishiyama K, Saito T, Kobayashi M, Khush GS, Kitano H, and Matsuoka M (2002). Green revolution: a mutant gibberellin-synthesis gene in rice. Nature 416(6882):701-702.

Schweizer P, Pokorny J, Schulze-Lefert P, and Dudler R (2000). Double-stranded RNA interferes with gene function at the single-cell level in cereals. Plant J 24(6):895-903.

SeedQuest (2002). At:

Seki M, Narusaka M, Kamiya A, Ishida J, Satou M, Sakurai T, Nakajima M, Enju A, Akiyama K, Oono Y, Muramatsu M, Hayashizaki Y, Kawai J, Carninci P, Itoh M, Ishii Y, Arakawa T, Shibata K, Shinagawa A, and Shinozaki K (2002). Functional annotation of a full-length Arabidopsis cDNA collection. Science 296:141-145.

Serageldin I (1999). Biotechnology and food security in the 21st century. Science 285:387-389.

Shen KA, Meyers BC, Nurul Islam-Faridi M, Chin DB, Stelly DM, and Michelmore RW (1998). Resistance gene candidates identified by PCR with degenerate oligonucleotide primers map to clusters of resistance genes in lettuce. Mol Plant-Microbe Interact 11:815-823.

Shirasu K, Nielsen K, Piffanelli P, Oliver R, and Schulze-Lefert P (1999). Cell-autonomous complementation of mlo resistance using a biolistic transient expression system. Plant J 17(3):293-299.

Skinner DZ, Budde A, Farman M, Smith R, Leung H, and Leong SA (1993). Genetic map, molecular karyotype and occurrence of repeated DNAs in the rice blast fungus Magnaporthe grisea. Theor Appl Genet 87:545-557.

Smith JR and Leong SA (1994). Mapping of a Magnaporthe grisea locus affecting rice (Oryza sativa) cultivar specificity. Theor Appl Genet 88:901-908.

Song W-Y, Wang G-L, Chen L-L, Kim H-S, Pi L-Y, Holsten T, Gardner J, Wang B, Zhai W-X, Zhu L-H, Fauquet C, and Ronald P (1995). A receptor kinase-like protein encoded by the rice disease resistance gene, Xa21. Science 270:1804-1806.

Song W-Y, Pi L-Y, Wang G-L, Gardner J, Holsten T, and Ronald PC (1997). Evolution of the rice Xa21 disease resistance gene family. Plant Cell 9:1279-1287.

Song WY, Pi LY, Bureau TE, and Ronald PC (1998). Identification and characterization of 14 transposon-like elements in the noncoding regions of members of the Xa21. Family of disease resistance genes in rice. Mol Gen Genet 258(5):449-456.

Speulman E, Bouchez D, Holub EB, and Beynon JL (1998). Disease resistance gene homologs correlate with disease resistance loci of Arabidopsis thaliana. Plant J 14:467 -474.

Staskawicz B, Dalhbeck D, Gassmann W, Mudgett MB, Chesnokova O, Jones J, and Stall R (2002). Transgenic tomatoes expressing the pepper Bs2 resistance gene confer resistance to Xantho-monas campestis pv. campestris in the field. In: Leong SA, Allen C, Tripplet EW eds. Biology of Plant-Microbe Interactions. Vol. 3. St. Paul: ISMPMI. pp 232-234.

Steinmetz LM, Snha H, Richards DR, Spiegelman JI, Oefner PJ, McCusker JH, and Davis RW (2002). Dissecting the architecture of a quantitative trait locus in yeast. Nature 416:326-330.

Sweigard JA, Valent B, Orbach MJ, Walter AM, Rafalski A, and Chumley FG (1993). Genetic map of the rice blast fungus Magnaporthe grisea. In: Obrien SJ ed. Genetic Maps. New York: Cold Spring Harbor Laboratory. pp 3112-3115.

Sweigard JA, Carroll AM, Kang S, Farrall L, Chumley FG, and Valent B (1995). Identification, cloning, and characterization of PWL2, a gene for host species specificity in the rice blast fungus. Plant Cell 7(8):1221-1233.

Sweigard JA, Carroll AM, Farrall L, Chumley FG, and Valent B (1998). Magnaporthe grisea pathogenicity genes obtained through insertional mutagenesis. Mol Plant-Microbe Interact 11(5):404-412.

Tai TH, Dahlbeck D, Clark ET, Gajiwala P, Pasion R, Whalen MC, Stall RE, and Staskawicz BJ (1999). Expression of the Bs2 pepper gene confers resistance to bacterial spot disease in tomato. Proc Natl Acad Sci USA 96:14153-14158.

Takaichi M and Oeda K (2000). Transgenic carrots with enhanced resistance against two major pathogens Erysiphe heraclei and Alternaria dauci. Plant Sci 153:135-144.

Takken FLW, Luderer R, Gabriels SHEJ, Westerink N, Lu R, de Wit PJGM, and Joosten MHAJ (2000). A functional cloning strategy, based on a binary PVX-expression vector, to isolate HR-inducing cDNAs of plant pathogens. Plant J 24(2):275-283.

Takken F, Turk S, van Haaren M, de Wit P, and Joosten M (2001). cDNA-AFLP reveals rapid changes in gene-expression patterns in Cf-4/Avr4-mediated plant defense. Abstracts of the 10th International Congress on Molecular Plant-Microbe Interactions, Madison, Abstract 436.

Tang X, Xie M, Kim Y-J, Zhou J, Klessig DF, and Martin GB (1999). Overexpression of Pto activates defense responses and confers broad resistance. Plant Cell 11:15-29.

Tanksley S and McCouch SR (1997). Seed banks and molecular maps—unlocking genetic potential from the wild. Science 277(5329):1063-1066.

Tanksley SD, Ganal MW, Prince JP, de Vicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, and Martin GB (1992). High density molecular linkage maps of the tomato and potato genomes. Genetics 132(4):1141 -1160.

Thornsberry JM, Goodman MM, Doebley J, Kresovich S, Nielsen D, and Buckler ES (2001). Dwarf8 polymorphisms associate with variation in flowering time. Nat Genet 28:286-289.

Timberlake WE and Marshall MA (1988). Genetic regulation of development in Aspergillus nidulans. Trends Genet 4:162-169.

Torto TA, Testa A, Styer A, Morgan WR, Kinney D, Huitema E, Hamada W, Dong S, and Kamoun S (2002). Applying the sequence-to-phenotype functional genomics paradigm to phytophthora. In: Leong SA, Allen C, Tripplet EW eds. Biology of Plant-Microbe Interactions. Vol. 3. St. Paul: ISMPMI. pp 331 -335.

Tu J, Ona I, Zhang Q, Mew TW, Khush GS, and Datta SK (1998). Transgenic rice variety "IR72" with Xa21 is resistant to bacterial blight. Theor Appl Genet 97:31-36.

Tu J, Datta K, Khush GS, Zhang Q, and Datta SK (2000). Field performance of Xa21 transgenic indica rice. Theor Appl Genet 101:1520.

Turgeon BG and Yoder OC (2002). Genome wide analysis of fungal pathogenicity to plants. In: Leong SA, Allen C, Tripplet EW eds. Biology of Plant-Microbe Interactions. Vol. 3. St. Paul: ISMPMI. pp 313-319.

United Nations (2002). Agenda 21—Chapter 14, Promoting sustainable agriculture and rural development. In: United Nations Sustainable Development, agenda21chapter14.htm.

Valent B, Farrall L, and Chumley F (1991). Magnaporthe grisea genes for pathogenicity and virulence identified through a series of backcrosses. Genetics 127:87-101.

Wang G-L, Mackill DJ, Bonman JM, McCouch SR, Champoux MC, and Nelson RJ (1995). RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistant rice cultivar. Genetics 136:1421-1434.

Wang ZX, Yano M, Yarnanouchi U, Iwamoto Manna L, Hayasaka H, Katayose Y, and Sasaki T (1999). The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J 19:55-64.

Wesley SV, Helliwell CA, Smith NA, Wang M-B, Rouse DT, Liu Q, Goodling PS, Singh SP, Abbott D, Stoutjesdijk PA, Robinson SP, Gleave AP, Green AG, and Waterhouse PM (2001). Construct design for efficient, effective and high-throughput gene silencing in plants. Plant J 27:581 -590.

Xiao JH, Li JM, Grandillo S, Ahn SN, Yuan LP, Tanksley SD, and Mccouch SR (1998). Identification of trait-improving quantitative trait loci alleles from a wild rice relative, oryza rufipogon. Genetics 150(2):899-909.

Xiao S, Ellwood S, Calis O, Patrick E, Li T, Coleman M, and Turner J (2001). Broad-spectrum mildew resistance in Arabidopsis thaliana. Science 291:118-120.

Yoshimura S, Yamanouchi U, Katayose Y, Toki S, Wang ZX, Kono I, Kurata NY, Yano M, Iwata N, and Sasaki T (1998). Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proc Natl Acad Sci USA 95(4):1663-1668.

Yoshioka K, Nakashita H, Klessig DF, and Yamaguchi I (2001). Probenazole induces systemic acquired resistance in Arabidopsis with a novel type of action. Plant J 25(2):149-157.

Yu J, Hu S, Wang J, Wong GK-S, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng J, Han Y, Li L, Li W, Hu G, Huang X, Li W, Li J, Liu Z, Li L, Liu J, Qi Q, Liu J, Li L, Li T, Wang X, Lu H, Wu T, Zhu M, Ni P, Han H, Dong W, Ren X, Feng X, Cui P, Li X, Wang H, Xu X, Zhai W, Xu Z, Zhang J, He S, Zhang J, Xu J, Zhang K, Zheng X, Dong J, Zeng W, Tao L, Ye J, Tan J, Ren X, Chen X, He J, Liu D, Tian W, Tian C, Xia H, Bao O, Li G, Gao H, Cao T, Wang J, Zhao W, Li P, Chen W, Wang X, Zhang Y, Hu J, Wang J, Liu S, Yang J, Zhang G, Xiong Y, Li Z, Mao L, Zhou C, Zhu Z, Chen R, Hao B, Zheng W, Chen S, Guo W, Li G, Liu S, Tao M, Wang J, Zhu L, Yuan L, and Yang HYu (2002). A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296:79-92.

Zhang Y, Fan W, Kinkema M, Li X, and Dong X (1999). Interaction of NPRl with basic leucine zipper protein transcription factors that bind sequences required for salicylic acid induction of the PR-1 gene. Proc Natl Acad Sci USA 96(11):6523-6528.

Zhu T, Budworth P, Han B, Brown D, Chang H-S, Zou Z, and Wang X (2001a). Towards elucidating global gene expression in developing Arabidopsis: parallel analysis of 8300 genes. Plant Physiol Biochem 39:221 -242.

Zhu T, Chang H-S, Schmeits J, Gil P, Shi L, Budworth P, Zou G, Chen X, and Wang X (2001b). Gene Expression Microarrays: Improvements and Applications Towards Agricultural Gene Discovery. JALA 6(6):95-98.

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